PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16057.2 Da PI: 11.2958 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.7 | 9.8e-19 | 23 | 144 | 1 | 114 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWka.....tgkd 89 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd +++e e yfF+ r + ++ rat++g +a tg + Sof018980 23 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYNLDPWDVVVpapapD-ASSEGEKYFFAVRPAGAG-KSGGARATANGAVEArregrTGGS 119 79****************************.8899999**********53334332.2345599****9988765.456677777776554111113434 PP NAM 90 kevlskkgelvglkktLvfykgrap 114 ++ ++++++lvg k +f r++ Sof018980 120 NPPVRRRETLVGREKAKTFVPRRKK 144 4444446777777777777655444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-21 | 21 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.251 | 23 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-11 | 24 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAAERAPVLV RHAGGGLEEL RQLPPGFRFR PTDEELVVQY LRRKAFGVPL PAAVIPVVRD 60 LYNLDPWDVV VPAPAPDASS EGEKYFFAVR PAGAGKSGGA RATANGAVEA RREGRTGGSN 120 PPVRRRETLV GREKAKTFVP RRKKKASX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-13 | 22 | 139 | 14 | 121 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 144 | RRRETLVGREKAKTFVPRRKKK |
2 | 131 | 143 | REKAKTFVPRRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13755 | 1e-126 | bud| leaf| meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320646.1 | 1e-65 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A1Z5RBQ7 | 2e-64 | A0A1Z5RBQ7_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G054252_P02 | 4e-55 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 3e-17 | NAC domain containing protein 41 |