PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 151aa MW: 16654.8 Da PI: 9.7031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.1e-34 | 11 | 146 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrF+Ptdeel+v+yL++++ +++l+ + i++v+i+ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatg++k+v ++ Sof018842 11 LPPGFRFRPTDEELIVHYLRRRALASPLPPAVDIPDVRILAHDPSDLlP--PGFSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGNEKPVAVAipaa 108 79*************************988556**************53..3447899************************************999888 PP NAM 96 .kgelvglkktLvfy.......kgrapkgektdWvmhey 126 +g g k + g++p+ge+ dWvmh+y Sof018842 109 aRGG-QGQSKPCLWDeavagvlPGKTPDGEQKDWVMHNY 146 6333.344343333324444446***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-34 | 8 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.784 | 11 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-18 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEVKDAAKPR LPPGFRFRPT DEELIVHYLR RRALASPLPP AVDIPDVRIL AHDPSDLLPP 60 GFSEQERYFF TCKEAKYVKG RRANRATGAG YWKATGNEKP VAVAIPAAAR GGQGQSKPCL 120 WDEAVAGVLP GKTPDGEQKD WVMHNYGSRA X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-26 | 7 | 146 | 11 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1434 | 1e-154 | bud| crown| inflorescence| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443168.1 | 5e-79 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-36 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | C5YNL7 | 1e-77 | C5YNL7_SORBI; Uncharacterized protein | ||||
STRING | Sb08g014060.1 | 2e-78 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-39 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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