PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof018703 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 17065.9 Da PI: 5.7563 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.4 | 1e-15 | 27 | 86 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + ++a++++e+ Sof018703 27 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 86 58*****************************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-11 | 24 | 78 | No hit | No description |
SMART | SM00338 | 1.2E-17 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.3 | 26 | 89 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-12 | 27 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.79E-10 | 28 | 78 | No hit | No description |
CDD | cd14702 | 1.46E-16 | 29 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSSSSLSPAG TGRTSGSDGD SAAADTHRRE KRRLSNRESA RRSRLRKQQH LDELVQEVAR 60 LQAENARVAA RAADIASQYA RVEQENTVLR ARADELGDRL RSVNEVLRVV EEFSGVAMDI 120 QEEMPADDPL LPPWQLAYPA GDMPIRAEHM PQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | RRSRLRK |
2 | 40 | 47 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.3613 | 0.0 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962768.1 | 8e-90 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 1e-87 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A2T7EHZ0 | 2e-88 | A0A2T7EHZ0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6R976 | 2e-88 | A0A3L6R976_PANMI; Ocs element-binding factor 1 | ||||
TrEMBL | K3ZAH0 | 2e-88 | K3ZAH0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ca02565.1.p | 4e-92 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 7e-28 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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