PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof017332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 18413.3 Da PI: 8.7211 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 97 | 155 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnhe Sof017332 97 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFDHNHE 155 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 91 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 94 | 157 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-36 | 96 | 156 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.007 | 97 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 98 | 155 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSSAEDGYCS SDSPRAESPD EPPLPAAGAG ADADAESLRA GAAGLNKRER DLPASPSSPL 60 PPAKRSRRSV EKRVVSVPLA ECGDRPTGAT GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY 120 RCSSSKGCPA RKQVERSRAD PTVLLVTYTF DHNHEAPQPK SSGGSCHQEG KPSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-20 | 72 | 154 | 6 | 76 | Disease resistance protein RRS1 |
5w3x_D | 8e-20 | 72 | 154 | 6 | 76 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9591 | 7e-33 | crown| meristem| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458491.1 | 6e-93 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 3e-44 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | C5XK43 | 1e-91 | C5XK43_SORBI; Uncharacterized protein | ||||
STRING | Sb03g034670.1 | 2e-92 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-37 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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