PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016729
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 182aa    MW: 19133.4 Da    PI: 8.9205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-130608PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002781103123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  Cgk F +   L  H ++H
  Sof016729  81 FRCAVCGKAFASYQALGGHKSSH 103
                89**********99999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-1280105IPR007087Zinc finger, C2H2
SMARTSM003550.1181103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.65E-981103No hitNo description
PROSITE profilePS5015710.67981108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-9137164No hitNo description
PfamPF139122.5E-6142164IPR007087Zinc finger, C2H2
SMARTSM003550.32142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993142169IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAAGFEAIPD PTALSLALPT PAPGPGLKLN KEDYLAICLA ALAGTRKFGL GRERDQEQHQ  60
HQPTNKWCPP THAPAQQELR FRCAVCGKAF ASYQALGGHK SSHRKPPTPE QYAAAAAQPQ  120
AVSTADSEET TSSSGGTAGG PHRCTICRRG FATGPALGGH QRCHFWDRAS SGSVSLSGFR  180
TG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.162941e-111root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465091.23e-64uncharacterized protein LOC8063219
RefseqXP_025797129.14e-68zinc finger protein 36-like
SwissprotQ75KE55e-56ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLC5WVL98e-67C5WVL9_SORBI; Uncharacterized protein
STRINGSb01g031900.11e-67(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-20zinc-finger protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]