PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof016658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 20071.5 Da PI: 9.6194 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ +gyWkatg+dk+++s+ +g++ Sof016658 25 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPAKAVFGESEWYFFSPRDRKYPNGARPNRAAGTGYWKATGTDKAIMSTpTGQH 123 799***************************.88***************8777899***************************************989999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy g pkg+ktdW+mheyrl Sof016658 124 IGVKKALVFYGGPPPKGVKTDWIMHEYRL 152 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-62 | 20 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.128 | 25 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-26 | 26 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAMPSPSPSR SSGSGSCRVA PNLNLPAGFR FHPTDEELIV HYLMNQAASI PCPVPIIAEV 60 NIYQCNPWDL PAKAVFGESE WYFFSPRDRK YPNGARPNRA AGTGYWKATG TDKAIMSTPT 120 GQHIGVKKAL VFYGGPPPKG VKTDWIMHEY RLVTAADGKT ATAAKRRGGS MRLDDWVLCX 180 IHX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-70 | 22 | 182 | 12 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}. | |||||
Uniprot | TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448919.1 | 1e-112 | NAC transcription factor 29 | ||||
Swissprot | Q8H4S4 | 3e-78 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | C5Y3M1 | 1e-111 | C5Y3M1_SORBI; NAC69 | ||||
STRING | Sb05g001580.1 | 1e-112 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-76 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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