PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof016200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 20034.4 Da PI: 10.6839 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.1e-31 | 104 | 161 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp ++++tYegeH+h+ Sof016200 104 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLVVTYEGEHRHT 161 9************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.9E-19 | 58 | 100 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-32 | 90 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.446 | 97 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 100 | 161 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 102 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-27 | 104 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
XHPQSLTLDF TKPNLTMSGA TSVTSTSFFS SVTAGEGSVS KGRSLMSSGK PPLSGHKRKP 60 CAGAHSEATT NGSRCHCSKR RKNRVKRTIR VPAISSKIAD IPPDEYSWRK YGQKPIKGSP 120 YPRGYYKCST VRGCPARKHV ERATDDPAML VVTYEGEHRH TPGAAGPSPL ATASPVAAAV 180 SVSAGNGHV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 90 | 160 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.15966 | 2e-79 | inflorescence| leaf| meristem| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826285.1 | 1e-119 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 1e-69 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A2S3IA44 | 1e-118 | A0A2S3IA44_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J30274.1.p | 1e-116 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.1 | 6e-65 | WRKY DNA-binding protein 11 |