PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C3H | ||||||||
Protein Properties | Length: 194aa MW: 21825.1 Da PI: 10.0105 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 62 | 84 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k +lC+ff+ G C G+ C F+H Sof015792 62 KKVLCKFFMH-GACLKGEYCEFSH 84 789***8888.************* PP | |||||||
2 | zf-CCCH | 29.6 | 1.2e-09 | 93 | 113 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Sof015792 93 VCTFYQK-GACSYGSRCRYDHV 113 5******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15663 | 2.7E-8 | 59 | 118 | No hit | No description |
PROSITE profile | PS50103 | 13.619 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-7 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 60 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 93 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
XRCVKREERN LRKAHQFEAI PSPWRRGGKD SNQRRSLGDG AVTRLSGRAS LSDRFGWAMS 60 TKKVLCKFFM HGACLKGEYC EFSHNWSDQA NNVCTFYQKG ACSYGSRCRY DHVKVSRNPT 120 VPPPPPTSSA ARRVTSTSLQ LLSSSQPHTG HQTDSSNQRH QISVDVLAHS ASKPAWRNDF 180 QHDIVSDDGI DWSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.2281 | 0.0 | callus| inflorescence| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305364.1 | 9e-79 | E3 ubiquitin-protein ligase makorin isoform X1 | ||||
Swissprot | Q5ZA07 | 2e-66 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A194YIW9 | 2e-77 | A0A194YIW9_SORBI; Uncharacterized protein | ||||
STRING | Sb10g012170.2 | 3e-78 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 8e-24 | C3H family protein |
Publications ? help Back to Top | |||
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