PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof015773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22261.8 Da PI: 9.4413 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.7 | 1.4e-46 | 19 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppGfrF+Ptdeelv ++Lk+++++ + + +++v++yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd+ ++ +g++ Sof015773 19 PPGFRFSPTDEELVLYFLKRRIASGRPSP--YVADVEVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKDRFICG-GGRA 115 9*********************9999655..69*************94357888999*************************************9.99** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLv+++grap+ge+tdWvmhey+l Sof015773 116 VGNKKTLVYHHGRAPRGERTDWVMHEYTL 144 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-53 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.744 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
RHQHQPSGEM ETPPPRRWPP GFRFSPTDEE LVLYFLKRRI ASGRPSPYVA DVEVYKSHPS 60 HLPERSALQT GDRQWFFFSR MDRKYPNGSR ASRTTGDGYW KATGKDRFIC GGGRAVGNKK 120 TLVYHHGRAP RGERTDWVMH EYTLLADALP PAAQGREFYA LYKLFQKSGA GPKNGEQYGA 180 PFREEDWLDD DDEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-43 | 19 | 144 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462597.1 | 1e-133 | NAC domain-containing protein 82 isoform X2 | ||||
Refseq | XP_021310063.1 | 1e-133 | NAC domain-containing protein 82 isoform X1 | ||||
Swissprot | Q9XIC5 | 1e-72 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A3L6E358 | 1e-136 | A0A3L6E358_MAIZE; NAC domain-containing protein 17 | ||||
STRING | Sb02g028750.1 | 1e-132 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 4e-70 | NAC domain containing protein 17 |