PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015514
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 197aa    MW: 22032.4 Da    PI: 6.1322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-24937PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11133180455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN+++  L++l P +    +k   Ka++L + + Y++sLq
  Sof015514 133 SHSLAERFRREKINEKMKLLQDLCPXC----NKITGKAMMLDEIIXYVQSLQ 180
                8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.259129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9133184No hitNo description
PfamPF000104.0E-8133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTYSPPRTDP DREEEQCFAI GTNLLASLDH TMNFDEPIVF PVNNVGMQKG VQLYNSTGDA  60
QPSRNMNTGK CLKDGKRKGS GEDSSSLHSL DEASALLQQE VSMECADEKA GDAGAKREDY  120
VHVRAKRGQP TNSHSLAERF RREKINEKMK LLQDLCPXCN KITGKAMMLD EIIXYVQSLQ  180
RQVEFLSMKL SAIKPEP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.229660.0crown| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468224.21e-129transcription factor bHLH74 isoform X1
RefseqXP_021317580.11e-129transcription factor bHLH74 isoform X1
RefseqXP_021317585.11e-129transcription factor bHLH74 isoform X1
TrEMBLC5WRR21e-127C5WRR2_SORBI; Uncharacterized protein
STRINGSb01g042070.11e-127(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-40bHLH family protein