PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GeBP | ||||||||
Protein Properties | Length: 206aa MW: 22557.7 Da PI: 11.0108 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 32.9 | 1.7e-10 | 54 | 144 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqr ws De+ +L +l +++ ++g + +++ + +s++ k v ++l K r++K+++ ++ kk + eh++ + l + +Wg Sof014708 54 LFQRTWSPGDEVRILEALATYRREHG-GSLPTPAELFGALDGSLDKKgVGAKELAIKQRSFKRRYDRDAKK-----TAPPADEHERRLYLLYRHVWG 144 69************************.77889999999*****98765899******************99.....445567999999*99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.6E-15 | 55 | 144 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAPSSPRRKK PSSAAKRAST GPTALPGRNK RKTPPPLPEA SGATQPPAKR KPALFQRTWS 60 PGDEVRILEA LATYRREHGG SLPTPAELFG ALDGSLDKKG VGAKELAIKQ RSFKRRYDRD 120 AKKTAPPADE HERRLYLLYR HVWGRDPPPR PPVAEVPRAT QGKGAGAQAS KDAAQAKSAD 180 HQSGKEAVKP KAKTFDEMRE LYPYLV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313179.1 | 1e-128 | uncharacterized protein LOC8067712 | ||||
TrEMBL | A0A1D6LF26 | 1e-104 | A0A1D6LF26_MAIZE; Tyrosine specific protein phosphatase-like | ||||
STRING | Sb01g024673.1 | 1e-114 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00610.1 | 1e-09 | DNA-binding storekeeper protein-related transcriptional regulator |