PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00610.1 | ||||||||
Common Name | F6N23.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 328aa MW: 37058 Da PI: 7.5069 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 108.4 | 5e-34 | 148 | 234 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDeiv+LqG+i+f+++tgk++s+d+++f+e++k+sisf+v+++q+v+Kir++K+K+ +++k+ ++ehd+k++el+++iW AT4G00610.1 148 LFQRLWTDEDEIVFLQGMIKFAKDTGKNVSEDMNGFFEKLKDSISFEVKTDQFVNKIRSMKRKYIENKKT---------TTEHDKKCYELAEIIWV 234 69****************************************************************9999.........99**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-24 | 149 | 233 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MVSVQNLKTD QLLNFLFKNP TKFLSRFSPM AKNKTLVTPS TVKKSSDVAS TSKKLSGVAS 60 PAKKPSGVTS PVKKPLEAVA STSSEEEEED EPSSDSESGS ESESDTEAEP MTLAAAAPSS 120 SNEKRQSEGK PEEERAKTET ETGKKPLLFQ RLWTDEDEIV FLQGMIKFAK DTGKNVSEDM 180 NGFFEKLKDS ISFEVKTDQF VNKIRSMKRK YIENKKTTTE HDKKCYELAE IIWVSDGDAT 240 ALVKPKKKKL KVDEESDWFE RSFVDGAFKE LGPGVDEETW KKNWSLVPVK KRKRIEEKVK 300 SMQADELKTT WQKIDVVHEM RSLMAKYV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18411388 | 0.0 | ||||
Expression Atlas | AT4G00610 | - | ||||
AtGenExpress | AT4G00610 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161472 | 0.0 | AL161472.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | F6N23 | 0.0 | AF058919.2 Arabidopsis thaliana BAC F6N23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191970.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | O65270 | 0.0 | STKLQ_ARATH; Probable transcription factor At4g00610 | ||||
TrEMBL | A0A178URS8 | 0.0 | A0A178URS8_ARATH; Uncharacterized protein | ||||
STRING | AT4G00610.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 | Representative plant | OGRP4222 | 5 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT4G00610.1 |
Entrez Gene | 827994 |
iHOP | AT4G00610 |
wikigenes | AT4G00610 |
Publications ? help Back to Top | |||
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