PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GRF | ||||||||
Protein Properties | Length: 209aa MW: 22409.9 Da PI: 10.8023 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.4 | 2.5e-23 | 122 | 166 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++rg++rsrk++e Sof014416 122 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRGCHRSRKHVEG 166 79****************************************996 PP | |||||||
2 | QLQ | 58.2 | 2.5e-20 | 62 | 98 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Sof014416 62 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 98 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-12 | 62 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.5E-14 | 63 | 96 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.308 | 63 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.668 | 122 | 166 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-18 | 123 | 165 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEGGGRDVFL GPPPPCPFHG SATAARSGGA QMLSFSSSNG AAGLGLCSRA SKMHSVLSRV 60 RGPFTPTQWM ELEHQALIYK HFAVNAPVPS SLLLPIKRSL NPWSSLGSSS LGWAPFRSGS 120 GDAEPGRCRR TDGKKWRCSR DAVGDQKYCE RHIKRGCHRS RKHVEGRKAT PTIADPTMAV 180 SGELLXHSHA GARLQXAKNS AANVTDPFS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.13155 | 0.0 | bud| inflorescence |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106041.1 | 1e-114 | putative growth-regulating factor 2 | ||||
Swissprot | Q6AWY1 | 2e-78 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A1D6F6N3 | 1e-113 | A0A1D6F6N3_MAIZE; Growth-regulating factor 2 | ||||
TrEMBL | A0A3L6FVQ3 | 1e-113 | A0A3L6FVQ3_MAIZE; Growth-regulating factor 8 | ||||
TrEMBL | B6SPI0 | 1e-113 | B6SPI0_MAIZE; GRF transcription factor | ||||
STRING | GRMZM2G099862_P01 | 1e-114 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-41 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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