PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 23307.2 Da PI: 10.3986 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.8 | 2.9e-42 | 2 | 118 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109 tdeel+++yL++ +++ ++ +++ +d++k++ wdLp +++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+++++ +++lvglkktLvfy Sof014375 2 TDEELITHYLARIAADPRFAP-RAVGVADLNKWNHWDLPYRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDRDIFR-GKALVGLKKTLVFY 99 8***********999999888.789999***********9888999***************************************.99************ PP NAM 110 kgrapkgektdWvmheyrl 128 +grap+g kt Wvmheyrl Sof014375 100 TGRAPRGGKTGWVMHEYRL 118 *****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.783 | 1 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-21 | 2 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-51 | 2 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
XTDEELITHY LARIAADPRF APRAVGVADL NKWNHWDLPY RATMGEKEWY FFCVKDRKYP 60 TGLRTNRATE SGYWKATGKD RDIFRGKALV GLKKTLVFYT GRAPRGGKTG WVMHEYRLHG 120 KHAAAAASSS SLIPSASVRA GASKDDWVLC XVFKKSIEPP SVAGSKRSSS VACMGMEDVL 180 XPFMSMGTIL PVALAPLMDV VRGSRRHMSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-45 | 2 | 156 | 26 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-45 | 2 | 156 | 26 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-45 | 2 | 156 | 26 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-45 | 2 | 156 | 26 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 2 | 156 | 29 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-45 | 2 | 156 | 26 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-45 | 2 | 156 | 26 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11556 | 0.0 | bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452340.1 | 1e-111 | NAC domain-containing protein 79 | ||||
Refseq | XP_021314112.1 | 1e-111 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 1e-66 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | C5XVR3 | 1e-110 | C5XVR3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g023990.1 | 1e-111 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 4e-67 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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