PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof014126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GeBP | ||||||||
Protein Properties | Length: 212aa MW: 23813.2 Da PI: 9.8204 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 36.1 | 1.8e-11 | 31 | 118 | 3 | 96 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqr ws De +L +l + ++g+ p+ d + + + ++++ + s s+l K+++L+ +++k vkk g sk+hd+ f+l k +W Sof014126 31 FQRTWSTGDEFRILEALAAHRLEHGTLPQT--DVLANALAGKLDnSGCSLSELQRKVKSLQSRYTKAVKK---GA--PPSKDHDRRLFDLFKNVW 118 9************************87665..567777877776257999********************...44..46799************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.0E-17 | 31 | 118 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
EEEAGDELFL TKPAPNQEMG AKGAKRPSAP FQRTWSTGDE FRILEALAAH RLEHGTLPQT 60 DVLANALAGK LDNSGCSLSE LQRKVKSLQS RYTKAVKKGA PPSKDHDRRL FDLFKNVWPS 120 VTKAPTKAAA NSGAGREPDE MCELYPYLAE EVKALQKAHP GLFKREFAMI DDSKARALDE 180 KIKKQRHLQM RLHLRRHDLT KEVTKTLMDL AE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.3873 | 1e-159 | bud| crown| inflorescence| leaf| seed |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141816.1 | 1e-122 | uncharacterized protein LOC100273955 | ||||
TrEMBL | C5XTG9 | 1e-123 | C5XTG9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g034490.1 | 1e-124 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 4e-07 | DNA-binding storekeeper protein-related transcriptional regulator |