PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof013777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24592.2 Da PI: 9.041 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.1 | 9.9e-20 | 2 | 53 | 7 | 58 |
EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 7 WrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 WrKYGqKe+ g + +sYYrC ++ gC+++k+v+r++edp++++++Y g+H++ Sof013777 2 WRKYGQKEILGEK--QSYYRCVHRpqGCNATKQVQRCDEDPTLFDVIYYGTHTC 53 ***********98..59******999**************************98 PP | |||||||
2 | WRKY | 76.6 | 2.9e-24 | 125 | 183 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 Dg++WrKYGqKe+ g ++p YYrCt+ +C ++k+v+rs++dp++++++Y+g H++ Sof013777 125 DGHSWRKYGQKEILGDKHPWTYYRCTHGysqRCAARKQVQRSDKDPTLFHVIYHGIHTC 183 9*************************977779*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.0E-20 | 1 | 55 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.089 | 1 | 51 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-17 | 2 | 53 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-19 | 2 | 54 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-20 | 2 | 53 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-24 | 108 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-22 | 122 | 184 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-28 | 123 | 185 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.772 | 125 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-22 | 125 | 183 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
XWRKYGQKEI LGEKQSYYRC VHRPQGCNAT KQVQRCDEDP TLFDVIYYGT HTCIQSTVVA 60 TVQQPECIQY KESLTSSSSV VPTSSSLSDY AGGSLKKTTK RKAMERRKHQ VRVRTEGGCE 120 PPSGDGHSWR KYGQKEILGD KHPWTYYRCT HGYSQRCAAR KQVQRSDKDP TLFHVIYHGI 180 HTCFQNNAGM ETWGAEPERA QASTNDPHYF QQLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 2 | 183 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9SUP6 | 4e-25 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A059VP87 | 1e-129 | A0A059VP87_9POAL; WRKY transcription factor 37 (Fragment) | ||||
STRING | Si028023m | 1e-46 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 4e-27 | WRKY family protein |