PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof013303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 22791.7 Da PI: 10.6453 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.8e-05 | 141 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Sof013303 141 FPCKVCGEVLGRPQLLELHQAMkH 164 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 143 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
XDIAVDLLPG SVVLAVTSVS VRGAPRRHVS SLATSLRFYI HRIFSSSGSG AKNGGTVAGS 60 REEEEAVATT VSSPLAQSLP HQPSTSVVLS TPSSPCASSP FMSPLSVRSL SATPVPSSSP 120 QKLLQASRQS SRSFAARGDV FPCKVCGEVL GRPQLLELHQ AMKHSLSELT HLDSSLNIIR 180 MIFLAGWKPA AASGARAGEA PAVRPHSQGF TTTPGALGPV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16907 | 0.0 | crown| inflorescence| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313429.1 | 1e-101 | uncharacterized protein LOC8054291 | ||||
TrEMBL | C5WQ57 | 1e-100 | C5WQ57_SORBI; Uncharacterized protein | ||||
STRING | Sb01g040170.1 | 1e-101 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-09 | C2H2 family protein |