PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 24613.7 Da PI: 8.3386 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.1 | 4.2e-24 | 139 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+ + g pvkkkv+rsa+d+++++ tYegeHnh Sof012523 139 VKDGYQWRKYGQKVTKDNPCPRAYFXLILRpGLPVKKKVQRSADDTSILVATYEGEHNHG 198 58************************99988****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.055 | 134 | 200 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-24 | 138 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-20 | 138 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-24 | 139 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-20 | 140 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
DDDXTQVAAL ETELQRMSEE NRRLTEALAV AASKYEALRS QYTEMVATAG GNGNNPSSTS 60 EGGSVSPSRK RKSESMDTMP APPPAAAAQH PGPHPHLHHP ADQTECTSGE PCKRIREECK 120 PKVSKLYVHA DPADLSLVVK DGYQWRKYGQ KVTKDNPCPR AYFXLILRPG LPVKKKVQRS 180 ADDTSILVAT YEGEHNHGQP XAGPSQHAHA AHDGSGAPGR NKNLAVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 124 | 200 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | SRKRKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.17885 | 1e-116 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in aleurone cells (PubMed:15047897, PubMed:16623886). In seeds, predominantly present in the plumule, radicle and scutellum of the embryo (PubMed:16623886). Expressed in roots, stems, young leaves and spikelets (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:18175928, PubMed:15047897, PubMed:16623886). Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897, PubMed:16623886, PubMed:19199048). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (PubMed:18175928, PubMed:26851365, PubMed:26467468). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Confers resistance to the virulent bacterial pathogen Xoo 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:18175928, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:26467468, ECO:0000269|PubMed:26851365}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M. grisea crabgrass BR29) (PubMed:18175928, PubMed:19772648, PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897, PubMed:19199048). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a GA biosynthesis inhibitor (PubMed:16623886). Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (PubMed:14645724, PubMed:23495849). {ECO:0000269|PubMed:14645724, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:18175928, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:19772648, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:23495849}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451666.1 | 1e-103 | WRKY transcription factor WRKY71 | ||||
Swissprot | Q6QHD1 | 4e-92 | WRK71_ORYSJ; WRKY transcription factor WRKY71 | ||||
TrEMBL | A0A482IF06 | 1e-124 | A0A482IF06_SACSP; Transcription factor WRKY | ||||
STRING | Pavir.Aa03147.1.p | 1e-104 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-43 | WRKY DNA-binding protein 40 |