PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof012427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 24953.1 Da PI: 7.4691 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.8 | 9.1e-12 | 43 | 95 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ +g+t+ +c++r++ ++ Sof012427 43 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarLGLTPHSCRLRFRHLR 95 9999*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0014 | 39 | 97 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.04E-5 | 40 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 42 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-9 | 43 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-4 | 43 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
XLRPHLHCLT GENAGRMADG SDGTDVSPES ETTAAAVKGG EIWGTLEELL LACAVTRHGT 60 ASWDSVAMEV QTRSPVAARL GLTPHSCRLR FRHLRRRFST VGSGGEEAEA EAEAEEDPDA 120 SAAEGWVDEL RRLRVAELRR DVERCDLSIG SLQAKVKRLK EERERERERE RNVSCEAKPD 180 EVSVNDRLSS PTRSPGGRAG KXNFTDLNPP KPPGTRAAAA GPKRKRLX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18470 | 0.0 | bud| inflorescence| leaf| meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462574.2 | 1e-100 | uncharacterized protein LOC8055879 | ||||
TrEMBL | C5X3Y2 | 8e-88 | C5X3Y2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028460.1 | 1e-88 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 1e-10 | DNA-binding bromodomain-containing protein |