PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26050.9 Da PI: 9.8622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.1 | 3.5e-53 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++k+++ ++ +++ +d++k+ePwdLp +++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+++++ +++lv Sof011826 16 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGVADLNKCEPWDLPYRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDRDIFR-GKALV 113 79*************************888.789999***********9888999***************************************.99*** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+grap+g kt Wvmheyrl Sof011826 114 GLKKTLVFYTGRAPRGGKTGWVMHEYRL 141 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-64 | 8 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.55 | 16 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEHDVHHHQQ QVAMELPPGF RFHPTDEELI THYLARKAAD PRFAPRAVGV ADLNKCEPWD 60 LPYRATMGEK EWYFFCVKDR KYPTGLRTNR ATESGYWKAT GKDRDIFRGK ALVGLKKTLV 120 FYTGRAPRGG KTGWVMHEYR LHGKHAAAAA SSSSLIPSAS VRAGASKDDW VLCRVFKKSI 180 EPPSVAGSKR SSSVACMGME DVVGPSMSMV DDFAACALPP LMDVVRGSRR HMSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 12 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 12 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 12 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 12 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-56 | 14 | 179 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-56 | 12 | 179 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 12 | 179 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11556 | 0.0 | bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452340.1 | 1e-139 | NAC domain-containing protein 79 | ||||
Refseq | XP_021314112.1 | 1e-139 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 9e-83 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | C5XVR3 | 1e-137 | C5XVR3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g023990.1 | 1e-138 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-83 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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