PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27042.4 Da PI: 8.9745 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.9 | 3.3e-18 | 54 | 137 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF v++++s+ s ++g++ +++C k g+++ e k r+ra++ t+C ak++vk++ d+ +v+ l+HnH+++ Sof011294 54 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVEVAILDHNHPVS 137 5*****************9999.6677****************9988.....99*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-16 | 54 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEVEEPLPAS KNPRRARRRD LNALDPSMEE SDGGEDIGVP EVGMVFNNHT EVNRFYRKYA 60 RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD 120 KLLHVEVAIL DHNHPVSPAM ARFLNSYKQL SGPAKKRVRM GGXGAMPVEE SKQMPMDKLG 180 ELEQLLFGES KHHSFVERGR LELQPGDSEA PSAFLHSDAG QKCQLFSMSL NLDEGRLDPX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315775.1 | 1e-141 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A194YQY0 | 1e-140 | A0A194YQY0_SORBI; Uncharacterized protein | ||||
STRING | Sb04g025530.1 | 1e-141 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 2e-06 | FAR1-related sequence 6 |