PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011280

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 240aa MW: 26361.5 Da PI: 9.991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-1080133725	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.1	2.3e-14	57	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ + lG+g+W+ I++ + ++Rt+ q+ s+ qky Sof011280 57 PWTEEEHRKFLDGLRNLGKGDWRGISKGFVTTRTATQVASHAQKY 101 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.202	50	106	IPR017930	Myb domain
SuperFamily	SSF46689	2.02E-17	51	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-17	53	105	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-9	54	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	55	100	IPR009057	Homeodomain-like
Pfam	PF00249	7.6E-12	57	101	IPR001005	SANT/Myb domain
CDD	cd00167	1.71E-9	57	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
XDIKKSSSMP NLIIHKPLLS PGDAGDGKGY ASDDAELASG QQKRRRRKAQ ERKKGIPWTE 60 EEHRKFLDGL RNLGKGDWRG ISKGFVTTRT ATQVASHAQK YFLRQTNLGK KKRRASLFDV 120 GIADYNYHDD QVPSPQRSIA TKPAPTQEII HTDRGDVPYR GFGEILGNNM QVNQLTDYYY 180 FKKDPNVHLE TSLSMASGLE TASSANSLDL SIIAVNSLEL SIAPPARCGC GGSAGAIKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRRRRK
2	42	53	KRRRRKAQERKK
3	43	53	RRRRKAQERKK
4	109	113	KKKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.3368	1e-113	inflorescence\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269\|PubMed:12172034}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467479.1	1e-155	transcription factor MYBS2
Swissprot	B8BI93	5e-83	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	5e-83	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	C5WRH9	1e-154	C5WRH9_SORBI; Uncharacterized protein
STRING	Sb01g028870.1	1e-155	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-34	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]