PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 25948.3 Da PI: 6.6779 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.6 | 2.2e-11 | 56 | 108 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ ++ Sof011246 56 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarPGLTPHSCRLRFRHLR 108 9999*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.8E-4 | 52 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-5 | 53 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-5 | 55 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-9 | 56 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.87E-4 | 56 | 90 | No hit | No description |
PROSITE profile | PS50090 | 6.249 | 56 | 108 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
XNGGKGNGQG GAESLRPHLH CLTGENAGRM ADGSDGTDVS PESEATAAAV KGGEIWGTLE 60 ELLLACAVTR HGTASWDSVA MEVQTRSPVA ARPGLTPHSC RLRFRHLRRR FSTVGSGGEE 120 AEAEAEAEED PDASAAEGWV DELRRLRVAE LRRDVERCDL SIGSLQSKVK RLKEERERSV 180 SGEGKPDEVN VNDRLSSPSE EPGRSCRESN STDLKPPKPP ATKAAAAAPK RMRLRTRMPP 240 X |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18470 | 0.0 | bud| inflorescence| leaf| meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462574.2 | 1e-120 | uncharacterized protein LOC8055879 | ||||
TrEMBL | C5X3Y2 | 1e-100 | C5X3Y2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028460.1 | 1e-101 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 1e-13 | DNA-binding bromodomain-containing protein |