PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof011238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26316.4 Da PI: 7.0611 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.1e-07 | 140 | 189 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv av++lG+g+W+ + + k+Rt ++k++w ++ Sof011238 140 RRPFSVAEVEALVLAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 189 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.402 | 135 | 194 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-6 | 139 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-10 | 140 | 190 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.43E-18 | 141 | 191 | No hit | No description |
SuperFamily | SSF46689 | 6.32E-16 | 141 | 222 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
XDSKTLIQAG IGQDDMLDNL GFSLEPNCTQ NPQVQAPEDI SFLETIDTTE PLARIAPADS 60 CSKHGEVDVS QELALTPLAM NYQGSDHDSV HSPGGVSSPD KVSTNSRALV PVAAADPNAG 120 AIVPAKKSKR SPEQGQRRIR RPFSVAEVEA LVLAVEKLGT GRWRDVKLRA FDNAKHRTYV 180 DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SQQQAKLQPK TPPLAEARLL 240 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-57 | 126 | 226 | 4 | 103 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.12791 | 1e-100 | bud| callus| inflorescence| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321659.1 | 1e-167 | telomere repeat-binding protein 5 | ||||
Refseq | XP_021321664.1 | 1e-167 | telomere repeat-binding protein 5 | ||||
Swissprot | Q6R0E3 | 4e-72 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A1B6QP34 | 1e-166 | A0A1B6QP34_SORBI; Uncharacterized protein | ||||
STRING | Sb01g039650.1 | 1e-167 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-64 | TRF-like 2 |