PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010752
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 247aa    MW: 27100.8 Da    PI: 10.3379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-38133726PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1996146256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Sof010752  96 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 146
                69*******.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-3896159IPR001471AP2/ERF domain
PROSITE profilePS5103224.48796153IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2296154IPR016177DNA-binding domain
CDDcd000184.89E-1796155No hitNo description
Gene3DG3DSA:3.30.730.106.1E-3296154IPR001471AP2/ERF domain
PRINTSPR003675.1E-1197108IPR001471AP2/ERF domain
PfamPF008471.4E-1297145IPR001471AP2/ERF domain
PRINTSPR003675.1E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XRKHAPADSF SLQSTSILLL CSLKHSTKNL SSFKLLEEFM CGGAIIFDYI PARRRVSAAD  60
FWPDSEADAE DYHASHTPAP ERAPLAKKAK RGRKNQYRGI RQRPWGKWAA EIRDPVKGVR  120
VWLGTYPTAE AAARAYDRAA RRIRGAKAKV NFPNDTSPTV TVPTAAASGA AAAAQAPAVL  180
PAPKVEAQTQ VSDEGQELSE QLMGYENYMN FLGIPYMEGG MQLQVPPPLP LAPAAKKRRC  240
RRPAGLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2296153563ATERF1
3gcc_A5e-2296153563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61930.0callus| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.15e-87uncharacterized protein LOC100193143
TrEMBLB4FDY91e-85B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM41e-85K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P012e-86(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-28ERF family protein