PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009561
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 266aa    MW: 28492.1 Da    PI: 10.3857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-83758PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.62.2e-44111521128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                lppGfrF+Ptdeel+v+yL++++ +++l+ +  i++v+i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v ++    
  Sof009561  11 LPPGFRFRPTDEELIVHYLRRRALASPLPPAVDIPDVRILAHDPSDLlP--PGFSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAipaa 108
                79*************************988556**************53..3447899************************************999999 PP

        NAM  96 ........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                        +  +     vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Sof009561 109 arggqgqgQ--QgqavlVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 152
                987766440..166677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-488189IPR003441NAC domain
PROSITE profilePS5100547.30611189IPR003441NAC domain
PfamPF023654.8E-2612152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEVKDAAKPR LPPGFRFRPT DEELIVHYLR RRALASPLPP AVDIPDVRIL AHDPSDLLPP  60
GFSEQERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAIPAAAR GGQGQGQQGQ  120
AVLVGMKRSL VFYRGKPPTG SKTDWVMHEY RLAGAGLSPC RRAAAQDGDA DAAVSRPAEG  180
WVLCRVFRKK KGSAASAAAS PGEDRSDGES ESAGAGGPGF IDFFARADAA GRRRRAASPV  240
VSSSCLTDAS PERQQGREQE NTSRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-371119017166NO APICAL MERISTEM PROTEIN
1ut4_B3e-371119017166NO APICAL MERISTEM PROTEIN
1ut7_A3e-371119017166NO APICAL MERISTEM PROTEIN
1ut7_B3e-371119017166NO APICAL MERISTEM PROTEIN
3swm_A3e-371119020169NAC domain-containing protein 19
3swm_B3e-371119020169NAC domain-containing protein 19
3swm_C3e-371119020169NAC domain-containing protein 19
3swm_D3e-371119020169NAC domain-containing protein 19
3swp_A3e-371119020169NAC domain-containing protein 19
3swp_B3e-371119020169NAC domain-containing protein 19
3swp_C3e-371119020169NAC domain-containing protein 19
3swp_D3e-371119020169NAC domain-containing protein 19
4dul_A3e-371119017166NAC domain-containing protein 19
4dul_B3e-371119017166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.14341e-146bud| crown| inflorescence| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443168.11e-148NAC domain-containing protein 83
TrEMBLC5YNL71e-147C5YNL7_SORBI; Uncharacterized protein
STRINGSb08g014060.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-52NAC domain containing protein 83