PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009189
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 273aa    MW: 29580.4 Da    PI: 9.7036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17311673PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.3e-26113172258
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v++++edp++++++Y g+H++
  Sof009189 113 DDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCAATKQVQCTDEDPTFFDVVYLGDHTC 172
                8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-26103173IPR003657WRKY domain
PROSITE profilePS5081120.69107170IPR003657WRKY domain
SuperFamilySSF1182904.32E-24110172IPR003657WRKY domain
SMARTSM007742.0E-37112174IPR003657WRKY domain
PfamPF031061.7E-25113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MASVVDGNGD SRLVVTELGH VKELARQLEV HLGGSSPDLC KHLASQISTI AERSISLLIT  60
TSNLVGARKR SAVASPLSDA SNAPFIKATK KRKTMDKKRH EVRVSSAGDH PADDGHSWRK  120
YGQKEILGAK HPRGYYRCTH RHSQGCAATK QVQCTDEDPT FFDVVYLGDH TCVQSQKAAA  180
GQAAADAPAL TVKTEGPPWD QSSNLKPGTH PPLFCFFFPP GNGKRVPRAR NASPFSGRPS  240
SRNWGLVPAT LDFNHVVFFP PFEGAGEQLP FGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22113172968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.10340.0bud| crown| meristem| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460068.21e-114probable WRKY transcription factor 17
TrEMBLC5X9X71e-114C5X9X7_SORBI; Uncharacterized protein
STRINGSb02g022280.11e-115(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-31WRKY DNA-binding protein 46