PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008597

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 286aa MW: 31118.6 Da PI: 6.519

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-3011	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.6e-55	24	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdee+v++yL++k+ ++++++ vi++vd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ ++ lv Sof008597 24 LPPGFRFHPTDEEVVSHYLTHKALNSSFSC-VVIADVDLNKIEPWDLPSKAKMGEKEWYFFCHKDRKYPTGLRTNRATASGYWKATGKDKEIFRGHRVLV 122 79************************99.78***********99999**************************************99999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grap+g kt Wvmheyrle Sof008597 123 GMKKTLVFYTGRAPRGGKTPWVMHEYRLE 151 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-63	21	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	24	174	IPR003441	NAC domain
Pfam	PF02365	4.7E-29	25	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MASEVSSETN QQGGAAEEET RLDLPPGFRF HPTDEEVVSH YLTHKALNSS FSCVVIADVD 60 LNKIEPWDLP SKAKMGEKEW YFFCHKDRKY PTGLRTNRAT ASGYWKATGK DKEIFRGHRV 120 LVGMKKTLVF YTGRAPRGGK TPWVMHEYRL EGSLPSNLRR GAKDEWAVCK VFNKDLAAKA 180 GQMAPLQAVG GGMERSDSLA FLDDLVLDNA DLPPLIDSPY ADAGLIVDYN KSAVGGASSF 240 SFAAAGTNDS GGYQVVKAEP QPQLPAASNN PVGGGSYSYQ QQAGEX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-56	20	179	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-56	20	179	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-56	20	179	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-56	20	179	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	20	179	16	173	NAC domain-containing protein 19
3swm_B	5e-56	20	179	16	173	NAC domain-containing protein 19
3swm_C	5e-56	20	179	16	173	NAC domain-containing protein 19
3swm_D	5e-56	20	179	16	173	NAC domain-containing protein 19
3swp_A	5e-56	20	179	16	173	NAC domain-containing protein 19
3swp_B	5e-56	20	179	16	173	NAC domain-containing protein 19
3swp_C	5e-56	20	179	16	173	NAC domain-containing protein 19
3swp_D	5e-56	20	179	16	173	NAC domain-containing protein 19
4dul_A	5e-56	20	179	13	170	NAC domain-containing protein 19
4dul_B	5e-56	20	179	13	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-175	NAC domain-containing protein 79
Swissprot	Q9FK44	8e-86	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A097C0P6	0.0	A0A097C0P6_9POAL; NAC11
STRING	Sb02g043270.1	1e-175	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-88	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]