PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof008175

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

EIL

Protein Properties

Length: 297aa MW: 32811.1 Da PI: 5.2287

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-53241	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	321.9	1.7e-98	1	285	99	352
XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----G CS EIN3 99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkp 198 v+fdrngpaai+kyqa+n++++ e++l + + +++hsl+elqDTtlgSLLsalmqhcdppqrr+plekgv+pPWWPtG+e+ww+elg++kdqg+ppykkp Sof008175 1 VRFDRNGPAAIAKYQADNAVPGAENELAS-GAASPHSLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGVPPPWWPTGDEEWWPELGIPKDQGPPPYKKP 99 89***********************66.****************************************************************** PP GG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.XXXX..XXXXXXXXXXXXXXXXXXXXXX.X CS EIN3 199 hdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.slrk..qspkvtlsceqkedvegkkeskik 293 hdlkkawkvsvLtavikhmsp+ie+ir+l+rqsk+lqdkm+ake ++l+v++qee+++ ++++ ++ s+ ++ +++ s ++++dv+ +e k Sof008175 100 HDLKKAWKVSVLTAVIKHMSPDIEKIRRLVRQSKCLQDKMTAKEISTWLAVVKQEEELYLKLHPGalPPaSTGGiaSAISFNTS-SSEYDVDIIDECKGD 198 ************************************************************98633333333244444444.559977777778 PP XXXXXXXXX............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXX CS EIN3 294 hvqavktta............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqn 352 ++ ++kt+ ++++++kr+++ + + + ++ ++tc++ q+++++++ ++ d+n+ +q Sof008175 199 EAGNQKTAVtdptafnlgaailsdkflvqtpmkeetaDVEFIQKRNAPAAAEPELMLNNRVYTCNNIQCPRNDYSYGLLDRNAPQQP 285 88888876688999*****************************987665555555567*******************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	7.0E-81	1	155	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.6E-75	29	163	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	4.58E-62	34	158	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
VRFDRNGPAA IAKYQADNAV PGAENELASG AASPHSLQEL QDTTLGSLLS ALMQHCDPPQ 60 RRYPLEKGVP PPWWPTGDEE WWPELGIPKD QGPPPYKKPH DLKKAWKVSV LTAVIKHMSP 120 DIEKIRRLVR QSKCLQDKMT AKEISTWLAV VKQEEELYLK LHPGALPPAS TGGIASAISF 180 NTSSSEYDVD IIDECKGDEA GNQKTAVTDP TAFNLGAAIL SDKFLVQTPM KEETADVEFI 240 QKRNAPAAAE PELMLNNRVY TCNNIQCPRN DYSYGLLDRN APQQPPSTPC KYNDPIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	1e-77	32	163	1	132	Protein ETHYLENE INSENSITIVE 3
4zds_B	1e-77	32	163	1	132	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots (PubMed:19798512). Expressed at low levels in leaves and panicles (PubMed:19798512). {ECO:0000269\|PubMed:19798512}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:30002253}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:19798512}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467935.1	0.0	ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_021317527.1	0.0	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q8W3M0	0.0	EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBL	A0A2U8KGF7	0.0	A0A2U8KGF7_9POAL; Ethylene-insensitive-3 (Fragment)
STRING	Sb01g036740.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	1e-104	EIL family protein

Publications ? help Back to Top
Kuroha T, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 2018. 361(6398): p. 181-186 [PMID:30002253]