PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007767

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB

Protein Properties

Length: 311aa MW: 32730.2 Da PI: 7.8365

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17314675	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.6e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Sof007767 13 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	55.3	1.5e-17	65	108	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ +k++w++ Sof007767 65 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 108 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.481	8	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-31	10	106	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-17	12	61	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-18	13	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-25	14	66	IPR009057	Homeodomain-like
CDD	cd00167	4.46E-16	15	57	No hit	No description
SMART	SM00717	5.6E-16	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	65	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.861	65	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-24	67	114	IPR009057	Homeodomain-like
CDD	cd00167	1.15E-12	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
XMGVESSECD RIKGPWSPEE DEALRRLVER HGARNWTAIG RGIPGRSGKS CRLRWCNQLS 60 PQVERRPFTP EEDAAILAAH ARLGNRWAAI ARLLPGRTDN AVKNHWNSSL KRKLATATFS 120 GGADVGGDAE RPCKRASPGP XSPTASDRSD LSHGCSGGAV AQVFRPVPRA GGFDAISCAX 180 DVRPSSPXPA AAAAADEDDP LXVVLLSLAG LDQQPALSGS THDSGEPLSG AFPLALSVGE 240 GFSFTRRLPF AGGSVSVGDP FNGELVAANP EMIRPEGRKF MSGPAFPPGA GPGPWEGFIR 300 QLGGGWMGPX W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-41	10	116	4	110	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16751	0.0	bud\| callus\| crown\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451692.1	1e-130	transcription factor MYB44
TrEMBL	A0A0C6WCM2	1e-130	A0A0C6WCM2_9POAL; ScMYB3 protein
STRING	Sb04g005940.1	1e-129	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	6e-62	myb domain protein r1