PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007708

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 34181.3 Da PI: 4.67

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-569133732	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	24	77	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Sof007708 24 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 77 5678*************************************************9 PP
2	HD-ZIP_I/II	130.8	5.3e-42	23	114	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++++al+++++ L +++++Lr+++ Sof007708 23 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFEALRADHDVLLQDNHRLRSQVV 114 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	18.22	19	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.94E-20	20	81	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-20	22	83	IPR001356	Homeobox domain
Pfam	PF00046	7.1E-18	24	77	IPR001356	Homeobox domain
CDD	cd00086	2.20E-20	24	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-22	25	86	IPR009057	Homeodomain-like
PRINTS	PR00031	1.9E-6	50	59	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-6	59	75	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.9E-17	79	121	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
NXTFFTSPDE LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EEENKLEPER KTELARKLGL 60 QPRQVAVWFQ NRRARWKTKQ LERDFDRLKA SFEALRADHD VLLQDNHRLR SQVVSLTEKL 120 QEKEATEGGA SAATDAAALP AVDDVKASLA DGVEEPTEPA EGAAAFEVQQ VKSEDRLSTG 180 SGGSAVVDAD ALLYGAGGRF AAAVDSSVES YFPGGEDHHY HDCGMGPVNH GAGGGIQSDD 240 DGAAATRDAA TTPRKTPPRR RFFLGHTPHH VDNDEDAGLS AAGGGPDDNS FVCDRPSKIF 300 SPYMISVGIS LCT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	79	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18018	1e-57	crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314789.1	1e-138	homeobox-leucine zipper protein HOX16-like isoform X2
Swissprot	A2X980	1e-103	HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	1e-103	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A194YSM2	1e-136	A0A194YSM2_SORBI; Uncharacterized protein
STRING	Sb04g029080.1	1e-136	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-57	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]