PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007626

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 316aa MW: 34680.2 Da PI: 8.4334

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-182133727	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	5.9e-47	14	137	3	125
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100 pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++v s+ ++++ Sof007626 14 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAVRSSadAKRVI 112 9***********************99.99***********99999*************************************99777888 PP NAM 101 glkktLvfykgrapkgektdWvmhe 125 glkktLvfy+grap+g+ktdWvm+e Sof007626 113 GLKKTLVFYQGRAPRGTKTDWVMNE 137 ***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-54	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	52.599	12	166	IPR003441	NAC domain
Pfam	PF02365	1.0E-22	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MAGAPSMEVE QDLPGFRFHP TEEELLGFYL SRVVHGKQLH FDIIGTLNIY RHDPWDLPAM 60 AKIGEREWYF FVPRDRKAGS GGRPNRTTER GFWKATGSDR AVRSSADAKR VIGLKKTLVF 120 YQGRAPRGTK TDWVMNEXXA SRHAXGGRAG PPASKEDMVL CKIYRKATPL KELEQRASAM 180 EEMQRRSSAA RAASLVQAAG SAGDDYLSVS SDDAHDSSFL QLPSSSSSAP SGDSYGAPAP 240 REAKTEAADA MAITVASTSS MAAVQPPAVR HADLPTLQVP TNNLGVADWT QMQDPFQLRS 300 PWQDQLFFSP LAHLLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	8	168	10	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465919.1	0.0	NAC domain-containing protein 35
Swissprot	Q10S65	1e-142	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A317Y2R2	0.0	A0A317Y2R2_MAIZE; NAC domain-containing protein 35
STRING	Sb01g048130.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-78	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]