PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004769 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||||||
Protein Properties | Length: 195aa MW: 21033.3 Da PI: 10.4571 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53 | 7e-17 | 127 | 156 | 2 | 31 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsag 31 dDg++WrKYGqK++ g+++pr+YYrCt+++ Sof004769 127 DDGHSWRKYGQKDILGAKHPRAYYRCTHPN 156 8***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-15 | 121 | 157 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.85 | 121 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-14 | 125 | 156 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-14 | 126 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-13 | 127 | 155 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MADAVESGGR ARLVSELGRV QDLVRQLELQ LRAPADAASV DLCRRLVHQV VALTDRSIGM 60 LHSSPDLAHS PPLSASPISS DAASDHHHNH PFRPASASPK KRKATARWTS QQVRVSAAGG 120 GAEGPADDGH SWRKYGQKDI LGAKHPRAYY RCTHPNSQNW PXPPNRCSAP TNNPGLLDVV 180 NHGEATWKAR GSKKA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16515 | 0.0 | root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444278.1 | 3e-87 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1Z5RAB5 | 7e-86 | A0A1Z5RAB5_SORBI; Uncharacterized protein | ||||
STRING | Sb07g019400.1 | 1e-86 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-13 | WRKY family protein |