PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004380
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 212aa    MW: 22990.9 Da    PI: 10.803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-37585PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-37586PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1982131255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +grW+AeIrdp     +  +r +lg+f taeeAa a++aa  +++g
  Sof004380  82 RFRGVRRRP-WGRWAAEIRDP-----HsrRRLWLGTFNTAEEAANAYDAANIRFRG 131
                69*******.**********7.....335*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-2982140IPR001471AP2/ERF domain
PfamPF008472.7E-1382131IPR001471AP2/ERF domain
CDDcd000187.38E-3082141No hitNo description
SMARTSM003801.2E-3282145IPR001471AP2/ERF domain
PROSITE profilePS5103224.43482139IPR001471AP2/ERF domain
PRINTSPR003671.7E-108394IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2183140IPR016177DNA-binding domain
PRINTSPR003671.7E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGTNPRLQDL AAVVVAAADS EPRPRARVVR ILVHDADATD SSSSEDEAPP PPPPRRRARG  60
GSSSVGVRRH VMEPAGASSA VRFRGVRRRP WGRWAAEIRD PHSRRRLWLG TFNTAEEAAN  120
AYDAANIRFR GASAPTNFPA ARYSPPPEPA KPIISLTPEP GKVITLPPVP VKPTFPLQVK  180
EEGGSYDGQV KGASLEGQAV LHRKPVWEDD PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17821391472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.74470.0bud| inflorescence| leaf| meristem| stem
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463655.11e-102ethylene-responsive transcription factor CRF4
SwissprotQ9SUE33e-28CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLC5WV631e-101C5WV63_SORBI; Uncharacterized protein
STRINGSb01g003670.11e-102(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.15e-10ERF domain protein 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]