PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004239 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB | ||||||||||||
Protein Properties | Length: 217aa MW: 23306.3 Da PI: 9.9248 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.7 | 1.5e-19 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + Sof004239 22 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 67 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 76 | 118 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Sof004239 76 PFTPEEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 118 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.597 | 17 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-32 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-17 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-18 | 22 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-16 | 24 | 66 | No hit | No description |
SMART | SM00717 | 1.7E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.338 | 74 | 123 | IPR017930 | Myb domain |
CDD | cd00167 | 3.33E-12 | 76 | 119 | No hit | No description |
Pfam | PF00249 | 8.5E-15 | 76 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MASPSPSCRG GGGKAADVDR IKGPWSPEED EALQRLVARH GARNWSLISR SIPGRSGKSC 60 RLRWCNQLSP QVEHRPFTPE EDDTILRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK 120 RKYYAAAPTG DAAAGPGGAA DADDERPLKR TSSDGHPXLC FSPGSPSGSD LSDSSHHSLP 180 FVMPSAGAAA AAXITFQQQQ QHVYRPVPRA GGXVLLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-39 | 7 | 122 | 43 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-39 | 7 | 122 | 43 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18242 | 0.0 | bud| crown| leaf| meristem| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151336.1 | 1e-118 | sucrose responsive element binding protein | ||||
Swissprot | O23160 | 4e-75 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | B6TZ85 | 1e-117 | B6TZ85_MAIZE; Sucrose responsive element binding protein | ||||
STRING | GRMZM2G050550_P01 | 1e-118 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-66 | myb domain protein 73 |
Publications ? help Back to Top | |||
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