PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof004111 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ERF | ||||||||||||
Protein Properties | Length: 222aa MW: 23628.2 Da PI: 5.2857 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.5e-14 | 138 | 177 | 2 | 44 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 +y+GVr+++ +g+++AeIrdp +ng +r++lg ++tae+Aa Sof004111 138 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGXYDTAEDAAV 177 8********.***********9987..**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 137 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-25 | 137 | 196 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-20 | 138 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-8 | 138 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.865 | 138 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-30 | 138 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 162 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLLNPASEAL VLDTIRQHLL EEPAPAAEAR PADESFGSLV ADQWSGSLPF RTDDADDMVV 60 FGALQDAFAY GWLPDGSFAH VKPEPVRSPD SSHSYDGSCC FGGLLDPASP LTPSSEGGEV 120 AATPRREEAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGXYD TAEDAAVCYN 180 PAAYRIGGLR APLNFPFQLG SKIAVVGGFH VLGYLHSGGQ GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-31 | 134 | 201 | 1 | 68 | ATERF1 |
3gcc_A | 6e-31 | 134 | 201 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.15469 | 0.0 | leaf| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142230.1 | 7e-96 | uncharacterized protein LOC100274398 | ||||
TrEMBL | A0A0A9S4Y9 | 3e-96 | A0A0A9S4Y9_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G080516_P01 | 3e-95 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-38 | ethylene responsive element binding factor 1 |