PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003800 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||
Protein Properties | Length: 233aa MW: 26398.9 Da PI: 10.3749 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.9e-53 | 60 | 187 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++ k +g++ Sof003800 60 LPPGFRFHPTDEELVVYYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIAPKgSGRV 158 79****************************.88***************8877899**************************************9977889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy+g+ap+g+ktdW+mheyrl Sof003800 159 AGIKKALVFYSGKAPRGVKTDWIMHEYRL 187 9**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-64 | 56 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.817 | 60 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 61 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
KPSTREQTRS LELEPGPSEQ PHQSIQPLGI SVKSKRRRGM AMVAAAEGSG RRDAEAELNL 60 PPGFRFHPTD EELVVYYLCR KVARQQLPVP IIAEVDLYKF DPWDLPEKAL FGRKEWYFFT 120 PRDRKYPNGS RPNRAAGRGY WKATGADKPI APKGSGRVAG IKKALVFYSG KAPRGVKTDW 180 IMHEYRLADA DRAPSKKGSQ KLDEWVLCRL YNKKNSLEKV KVXNQDPEAA AHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-94 | 52 | 219 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.6711 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458677.1 | 1e-132 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 1e-123 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | C5XN76 | 1e-131 | C5XN76_SORBI; NAC52 | ||||
STRING | Sb03g037940.1 | 1e-131 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 4e-90 | NAC family protein |