PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof003776

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

WRKY

Protein Properties

Length: 234aa MW: 24863.9 Da PI: 10.1132

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17352430	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-30643	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.4	6.3e-33	147	205	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fprsYYrCt+++C vkk+v+r a+d+++v++tYeg Hnh+ Sof003776 147 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCDVKKQVQRLAKDTSIVVTTYEGVHNHP 205 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-33	133	205	IPR003657	WRKY domain
SuperFamily	SSF118290	9.68E-29	139	206	IPR003657	WRKY domain
PROSITE profile	PS50811	28.552	142	207	IPR003657	WRKY domain
SMART	SM00774	2.5E-38	147	206	IPR003657	WRKY domain
Pfam	PF03106	3.5E-26	148	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MENSPLLGDI RQQPNTSLAT ATRLAPLPPA VAAPQPEQHA CSSDATTSLL VPGAAMSCPP 60 AAVDWALLLP RATGLLHVGT PPPQQQQESG GSSAVTMVTG SSASATTAGD GDKNKAGKAR 120 KGGGGRGKKK ASRPRFAFQT RSDSDVLDDG YRWRKYGQKA VKNSAFPRSY YRCTHHTCDV 180 KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALSPILKQL XALSQLQSGT NQTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	137	204	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	137	204	7	74	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.17276	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148624.1	1e-101	WRKY23 - superfamily of TFs having WRKY and zinc finger domains
TrEMBL	A0A3L6DSA4	1e-101	A0A3L6DSA4_MAIZE; Putative WRKY transcription factor 56
STRING	GRMZM2G015433_P01	1e-101	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	5e-51	WRKY DNA-binding protein 56