PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003750 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 235aa MW: 25082.6 Da PI: 6.257 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.6e-12 | 56 | 108 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ +g+t+ +c++r++ ++ Sof003750 56 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarLGLTPHSCRLRFRHLR 108 9999*********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0014 | 52 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.2E-5 | 53 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 55 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-9 | 56 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-4 | 56 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
XNGGKGNGQG GAESLRPHLH CLTGENAGRM ADGSDGTDVS PESEATAAAV KGGEIWGTLE 60 ELLLACAVTR HGTASWDSVA MEVQTRSPVA ARLGLTPHSC RLRFRHLRRR FSTVGSGGEE 120 AEAEAEVDPD ASAAEGWVDE LRRLRVAELR RDVERCDLSI GSLQSKVKRL KEEGSRNVSG 180 EAKPDEGSRN DRVSSLSEEP RAVCQGVELH GSDVPQAPWP PGRGRGCPRV RGLLT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18470 | 0.0 | bud| inflorescence| leaf| meristem| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462574.2 | 1e-100 | uncharacterized protein LOC8055879 | ||||
TrEMBL | C5X3Y2 | 5e-81 | C5X3Y2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028460.1 | 8e-82 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 5e-12 | DNA-binding bromodomain-containing protein |