PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Sof003505 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||||||
Family | MYB | ||||||||||||
Protein Properties | Length: 244aa MW: 27482.8 Da PI: 10.558 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 62 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Sof003505 62 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 109 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4.3e-19 | 115 | 159 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Sof003505 115 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 159 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-24 | 53 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.58 | 57 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-30 | 61 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 61 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 62 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-9 | 64 | 109 | No hit | No description |
PROSITE profile | PS51294 | 29.411 | 110 | 164 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 113 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-18 | 114 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-17 | 115 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.25E-12 | 117 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
XQQQQPPLPP ATQPTREARR GRKRRRQKDQ ESSQASIGGA VAARSTSIMG RSPCCEKAHT 60 NKGAWTKEED DRLVAYIKAH GEGCWRSLPK AAGLLRCGKS CRLRWINYLR PDLKRGNFTE 120 EEDELIIKLH SLLGNKWSLI AGRLPGRTDN EIKNYWNTHI RRKLLSKGID PVTHRPINEH 180 TSNITISFEA AAAAARDREE TKGAVFRLEE HNKAAAXSAA IIITPHPARE WGQGKPLKCP 240 DLNW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 61 | 164 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 25 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.6143 | 0.0 | inflorescence| leaf| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462743.1 | 1e-122 | myb-related protein Hv1 | ||||
Swissprot | P20026 | 1e-104 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A0A059Q2A7 | 1e-122 | A0A059Q2A7_9POAL; Myb domain protein 4 | ||||
STRING | Sb02g031190.1 | 1e-121 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-92 | myb domain protein 4 |