PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003411 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | GeBP | ||||||||||||
Protein Properties | Length: 247aa MW: 26875.5 Da PI: 4.8811 | ||||||||||||
Description | GeBP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 104.2 | 1e-32 | 102 | 201 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q ife+++ iW+ Sof003411 102 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIARTIWR 201 79*************************8867778***************************************88899*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.5E-30 | 103 | 200 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
XQAQAVELEP NPAETPNPSS RLEPIDPPIR SDLMFPTVDD PSAAGAMASS SFPDADAYGN 60 GDSDDLDFPV DPNPNPVFSS SPVAAPAAAP AAGSGAAERR PLFQRLWTDE DEIVILRAFA 120 EFTAQRGTSF ASHQYDTTPF YEDMRRRLNT GFTKNQLVEK IRRLKRKYRN CVERLRVAGA 180 GFTFRSPHEQ AIFEIARTIW RPASDKHGRD SDDKEEAAAA AATPTKPPLP WPPLGIDAAG 240 PNRGGSP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.16957 | 0.0 | callus| inflorescence| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142743.1 | 1e-108 | uncharacterized protein LOC100275086 | ||||
TrEMBL | A0A1E5VM57 | 1e-109 | A0A1E5VM57_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G026417_P01 | 1e-108 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 9e-33 | DNA-binding storekeeper protein-related transcriptional regulator |