PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003204 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | C3H | ||||||||||||
Protein Properties | Length: 256aa MW: 27745.1 Da PI: 6.2984 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.6e-06 | 119 | 140 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C aHg Sof003204 119 AACPDFRK-GGCKRGDACELAHG 140 78******.*********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.873 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 119 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 27 | 150 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.751 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MMMMGEGAHA PPWQQSPAAA ISGGSMDADE AASPYALLSA LQHYLPSNEV AAAAYDEDDE 60 EAAALAAVDA YACDEFRMYE FKVRRCLRGR SHDWTDCPYA HPGEKARRRD PRRYHYSGAA 120 CPDFRKGGCK RGDACELAHG VFECWLHPSR YRTQPCKDGT GCRRRVCFFA HTPDQLRVLP 180 PPQQPSASPK GAAAAAAAFP LAESYERSPL PPAAFESYLT KSGLIMLAVP DQDASFGLQG 240 SPSAGFDPVY GPPNPS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9975 | 0.0 | bud| callus| crown| inflorescence| leaf| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440755.1 | 1e-135 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 1e-105 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | C5YUD4 | 1e-134 | C5YUD4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g006050.1 | 1e-135 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 9e-71 | C3H family protein |
Publications ? help Back to Top | |||
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