PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Sof003126 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||||||
Protein Properties | Length: 259aa MW: 28238 Da PI: 9.8584 | ||||||||||||
Description | B3 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.4e-18 | 114 | 204 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k+++ps+v + +l +p f+++h k +++ ++lede+g+ ++ +++++ l++GW++F+ +++k+gD++vF+l+++++f +v ++r+ Sof003126 114 FTKTMLPSHVIRGFWLGMPVAFCNKHLPK--QDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESTKF--KVYIIRT 204 89**********************99433..5567***************..899888..9**********************9986777..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-20 | 108 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-23 | 109 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-25 | 113 | 203 | No hit | No description |
Pfam | PF02362 | 4.9E-16 | 114 | 204 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 114 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-18 | 114 | 205 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
KRKRGWPPGS KSAKSRIGRP PGAQSSKSKM EQKMALVKQR VALLDSASNS SCSDSDKPAV 60 LHCGDTDDEG DDIPLKASDI NGQTLSASVH GNCGSAMARA KEVQAKLPEN NLSFTKTMLP 120 SHVIRGFWLG MPVAFCNKHL PKQDTGIMLE DENGEDHHTT YLGSRQGLSG GWRGFAIKHD 180 IKVGDVLVFQ LVESTKFKVY IIRTNEFTAT DGAITLLNLR RRKKGKLLSK ATRGEHSVPA 240 DDEHGNVIFN EAGGLKNFE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.8016 | 0.0 | meristem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311371.1 | 1e-142 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
Swissprot | Q0JP99 | 1e-62 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A1B6Q0L5 | 1e-141 | A0A1B6Q0L5_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1B6Q0M7 | 1e-142 | A0A1B6Q0M7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g000666.1 | 1e-90 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-37 | B3 family protein |
Publications ? help Back to Top | |||
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