PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002862
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family FAR1
Protein Properties Length: 272aa    MW: 30769.4 Da    PI: 9.5488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17368323PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-64917PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.31.7e-25172257189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                +fY +YA ++GFsvrk    k+ +n  +++r +vCskeg++ ++ +   +++++r+etrtgC+a++++k + ++k++vt+++ +HnH+l
  Sof002862 172 EFYVNYAGTAGFSVRKGWLDKTAKNV-TKSRAYVCSKEGFHPKSASI--ESKKPRPETRTGCQAHMTIKITASAKYVVTEFVADHNHDL 257
                6********************95555.99************999877..99************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511528.93745105IPR001289Nuclear transcription factor Y subunit A
PfamPF031016.0E-23172257IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
XAAEGDSPED QEGVEEEVEV EVKEKRGRGR PRKAVMEDDA LQARVLRELG VRASQYSNEE  60
RKKILNKYRS KRQSRPASSR PTKIASRQAL AERRKRGDGG RFLSSEEQLP SQLPSERRSK  120
RLEKQNLKME KAESKEDETM EAEPDPEIEV VPGPGGEPKV AMVFLNEDKA YEFYVNYAGT  180
AGFSVRKGWL DKTAKNVTKS RAYVCSKEGF HPKSASIESK KPRPETRTGC QAHMTIKITA  240
SAKYVVTEFV ADHNHDLEIP LVDIQILKSQ KY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12432KRGRGRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.147860.0inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463799.11e-162protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
TrEMBLA0A1Z5S4Q51e-161A0A1Z5S4Q5_SORBI; Uncharacterized protein
STRINGSb01g006380.11e-161(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-17FAR1 family protein