PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof001980

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 343aa MW: 37576.9 Da PI: 9.8084

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17326629	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-61406	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	228	272	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eEd l+ +v+++G g+W+ I ++ + +Rtl q+ rw Sof001980 228 KAWSKEEDADLAAGVQKYGEGNWEDILHKCNfdSTRTLDQLSQRW 272 58******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-11	221	273	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.287	222	280	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-11	224	273	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-5	226	278	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-8	228	272	IPR001005	SANT/Myb domain
CDD	cd11660	1.88E-15	228	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
XAPEFPEQPK RTTAAAPPPS ADLSEMAAAA PAAGKGKRKR HLSEDDVYLL LHRYAPGTIL 60 TALQEVAQHA EGRRIDWRAV VGKSTTGITS AREYQMLWRH FAYHHDLEDS VDAGDQPLGD 120 DSDLELELEP NPIPTKEALS EASALAKALI SGSSREQASG HRINLDPPVL YTQNEKIVRV 180 PSEKQLAQSH RITNVTGAGA NSKQSSHIGP SSGHSDPNGA SKKRKKPKAW SKEEDADLAA 240 GVQKYGEGNW EDILHKCNFD STRTLDQLSQ RWALKRSGGS AKPGSTKHAS CGQKERSAAL 300 KAFSFAWRAY AENRGLLTKG FQISLPRLVL KSVKERMWGT LYR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

XAPEFPEQPK RTTAAAPPPS ADLSEMAAAA PAAGKGKRKR HLSEDDVYLL LHRYAPGTIL  60
TALQEVAQHA EGRRIDWRAV VGKSTTGITS AREYQMLWRH FAYHHDLEDS VDAGDQPLGD  120
DSDLELELEP NPIPTKEALS EASALAKALI SGSSREQASG HRINLDPPVL YTQNEKIVRV  180
PSEKQLAQSH RITNVTGAGA NSKQSSHIGP SSGHSDPNGA SKKRKKPKAW SKEEDADLAA  240
GVQKYGEGNW EDILHKCNFD STRTLDQLSQ RWALKRSGGS AKPGSTKHAS CGQKERSAAL  300
KAFSFAWRAY AENRGLLTKG FQISLPRLVL KSVKERMWGT LYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	225	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.10181	0.0	crown\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462936.1	0.0	uncharacterized protein LOC8084050
TrEMBL	C5XA31	0.0	C5XA31_SORBI; Uncharacterized protein
STRING	Sb02g034880.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	2e-19	MYB_related family protein