PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Sof001077 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||||||||||
Family | NAC | ||||||||||||||||
Protein Properties | Length: 204aa MW: 23947.2 Da PI: 10.6596 | ||||||||||||||||
Description | NAC family protein | ||||||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.2 | 9e-55 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdee+++ yL +k + ++ ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd+e++++ ++el Sof001077 16 LPPGFRFHPTDEEVITSYLLQKFLNPSFAP-HAIGEVDLNKIEPWDLPSKAKMGEKEWYFFCHKDMKYPTGTRTNRATKEGYWKATGKDREIFKQpNREL 114 79*************************888.78***************99999****************************************9989999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy grap+g+kt+Wvmhe+rl Sof001077 115 VGMKKTLVFYMGRAPRGTKTNWVMHEFRL 143 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-62 | 13 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 16 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MVERSVKSEH GVDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFAPHAIGE VDLNKIEPWD 60 LPSKAKMGEK EWYFFCHKDM KYPTGTRTNR ATKEGYWKAT GKDREIFKQP NRELVGMKKT 120 LVFYMGRAPR GTKTNWVMHE FRLDGKSRHN NDSNLRFNPK DEWVVCKVHH KGRRRGQHLE 180 ERRRRRAEFL GAGKPKLASS RSAX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 14 | 171 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 185 | RGQHLEERRRRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.22747 | 0.0 | callus| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448920.1 | 1e-123 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 2e-93 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | C5Y3M2 | 1e-121 | C5Y3M2_SORBI; Uncharacterized protein | ||||
STRING | Sb05g001590.1 | 1e-122 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-77 | Arabidopsis NAC domain containing protein 87 |