PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000566
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 483aa    MW: 50795.5 Da    PI: 5.6115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S20293897PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-30681PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-30682PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09290337455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sof000566 290 SHSLAERVRREKISQRMKLLQDLVPAC----NKVIGKALMLDEIINYVQSLQ 337
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.03E-9284341No hitNo description
SuperFamilySSF474598.37E-16284351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.754286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16288349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6290337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPSCFLN LNWDQSMAAA TAGDHLDPAL SSMVSSPASN STAAAATDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPPPQVGG AAPGGLPILE NLMPMGHLDQ  120
FLADPGFAER AARLSGFDGR PGGSGYGGAV PGQFGLPDAG PIGALKELEL GNGRDESSVS  180
DPASASAEMA LKAPSDGNAK KRKASGKGKG KDGPGSTAAK DVTKEESSGK RCKSVDEGNG  240
AEDNSTKGKA AQSNSENGGK KQGKDSISKP PEPPKDYIHV RARRGEATDS HSLAERVRRE  300
KISQRMKLLQ DLVPACNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT  360
LLQKDMFQAC GPSASSVFSL ESSSSGFPFS DQGDVFQSFV PNGLENQCGL NPLDLALSHA  420
TNGQYGFQDG TAGTNLQQRS YWEDDLQSVF HIDNNGQSQE NGVSVSAQSF HGQLQEGHMK  480
MEF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.134790.0bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLA0A2R4QNN30.0A0A2R4QNN3_9POAL; BHLH transcription factor
STRINGSi001242m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-51bHLH family protein