PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000239
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 294aa    MW: 33223.3 Da    PI: 5.2875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17476444PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-958133733PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-958133734PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-959133725PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-959133726PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.7e-52211461128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelv +yL+++++g++ ++ ++i+evd+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v + +g++v
  Sof000239  21 LPPGFRFHPTDEELVAHYLCARAAGRRPPV-SIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVEH-RGRTV 118
                79*************************999.89***************87778999*************************************9.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kk Lvfy+g+ p+g+kt+W+mheyrl
  Sof000239 119 GIKKALVFYHGKPPRGVKTEWIMHEYRL 146
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6317174IPR003441NAC domain
PROSITE profilePS5100559.63921174IPR003441NAC domain
PfamPF023654.9E-2722146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATVQQQQQP QRRDAEAELN LPPGFRFHPT DEELVAHYLC ARAAGRRPPV SIIAEVDLYR  60
FDPWDLPERA LFGRREWYFF TPRDRKYPNG SRPNRAAGSG YWKATGADKP VEHRGRTVGI  120
KKALVFYHGK PPRGVKTEWI MHEYRLADAG ARTKKSGTGT LRLDDWVLCR LYNKKNEWEK  180
MQQQKEKKEM ESEASHSHSD TRTPESEIDD DPFPELASLP ALDDMVGPAP AAPAAGAILP  240
KEEVEDFGDL GGDDWFAGIN LDDLQMPGDA DFFGNMLVSP MAAKMEQDAG FPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-98111805174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.142100.0bud| callus| crown| inflorescence| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459566.10.0NAC domain-containing protein 67
SwissprotQ7EZT11e-120NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLC5XDE90.0C5XDE9_SORBI; NAC25
STRINGSb02g006680.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-78NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]