PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||||||||||||||
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TF ID | Sof000166 | ||||||||||||||||||||||||||||
Organism | |||||||||||||||||||||||||||||
Taxonomic ID | |||||||||||||||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NAC | ||||||||||||||||||||||||||||
Protein Properties | Length: 334aa MW: 37182.6 Da PI: 6.5228 | ||||||||||||||||||||||||||||
Description | NAC family protein | ||||||||||||||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.9 | 3.4e-52 | 33 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v +g++ Sof000166 33 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGVREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RGRTL 130 79****************************.88***************8878899*************************************99.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+ap+g+ktdW+mheyrl Sof000166 131 GIKKALVFYAGKAPRGVKTDWIMHEYRL 158 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-64 | 29 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 33 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 34 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
XPPSVGFIRR QQPDQGMGVP VRRERDAEAE LNLPPGFRFH PTDDELVEHY LCRKAAGQRL 60 PVPIIAEVDL YKFDPWDLPE RALFGVREWY FFTPRDRKYP NGSRPNRAAG NGYWKATGAD 120 KPVAPRGRTL GIKKALVFYA GKAPRGVKTD WIMHEYRLAD AGRAXXXKKG SLXLDDWVLC 180 RLYNKKNEWE KMQLGKESAA GVGTTKEEAM DMTTSHSHSH SQSHSHSWGE TRTPESEIVD 240 NDPFPELDSF PAFQDPAAAM MMVPKKEQVD DGSAAANAAK SSDLFVDLSY DDIQGMYSGL 300 DMLPPPGEDF YSSLFASPRV KGNQPGGAAG LGPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-110 | 21 | 191 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.4219 | 0.0 | bud| callus| crown| inflorescence| leaf| meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466217.1 | 0.0 | NAC domain-containing protein 67 | ||||
Swissprot | Q75HE5 | 1e-172 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | A0A097C0Q3 | 0.0 | A0A097C0Q3_9POAL; NAC2 | ||||
STRING | Sb01g003710.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 3e-87 | NAC family protein |
Publications ? help Back to Top | |||
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