PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

96442

Common Name

SELMODRAFT_449657

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 439aa MW: 49211.7 Da PI: 6.0507

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
96442	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	342.8	5.7e-105	70	431	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 lv+lLl +Aea g++ la a++ rl+ ++++g++mqR+aayf AL+ rl++ k ++ +e+ + +++ a+++++e++P++kf+h+ aNqaIl 96442 70 LVHLLLGAAEATVCGETDLAIAIIDRLKSCcSTQSGTTMQRIAAYFRDALNCRLHG-----LKFFSRTES----QFDTVGAFHVLHEICPYIKFGHFSANQAIL 164 689*************************556667****************.....444443333....68889999****************** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVn 205 e+v+ge+rvHi Dfdi+ G+QWp+L+q+La R++gpp+l+iT++ +p+s+ +++etg+rLa A++++vpf fn + ++ + e++ ++L++ +gEal+Vn 96442 165 ESVAGEQRVHIFDFDITDGVQWPSLMQSLALRAGGPPQLKITALYRPNSKgALSTTQETGKRLAACARQFNVPFVFNQVRVDgESEEFLSSSLKLIQGEALVVN 268 *******************************************99989999*******************97777999************** PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309 ++l+l ++ +s + + + +L + l+P+v+ +ve++++++s++F rf eal++ys+lfdslea+l++e+e r+ vEr++lg++i+n v+ + ++ + 96442 269 CMLHLPHMSCHSRD---AVRFFLGKMAALRPRVLAIVEEDLSCTSTTFTGRFHEALYHYSTLFDSLEATLASEDEMRSLVERVFLGPRIKNTVTSAVSR-SPLE 368 9999844444...4559*********************************************************************99986.6666 PP GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++++W+ e++GF++ ++s+++ +qa+ll+ ++ dg++++e++++++l+Wk+rpL+++S+W 96442 369 KEANRWSGLAEAVGFQQRSFSSYNRCQARLLVGLFQ-DGHQIQEDEDTMLLCWKSRPLIAASVW 431 779*****************************.************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.01	44	413	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-102	70	431	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MLDDHERSFP DPQQVAVNPV SPPQYQQQQE IERSLVDFRH HSHDERVDFV YPELGVQVHP 60 WDEDMDSIRL VHLLLGAAEA TVCGETDLAI AIIDRLKSCC STQSGTTMQR IAAYFRDALN 120 CRLHGLKFFS RTESQFDTVG AFHVLHEICP YIKFGHFSAN QAILESVAGE QRVHIFDFDI 180 TDGVQWPSLM QSLALRAGGP PQLKITALYR PNSKGALSTT QETGKRLAAC ARQFNVPFVF 240 NQVRVDGESE EFLSSSLKLI QGEALVVNCM LHLPHMSCHS RDAVRFFLGK MAALRPRVLA 300 IVEEDLSCTS TTFTGRFHEA LYHYSTLFDS LEATLASEDE MRSLVERVFL GPRIKNTVTS 360 AVSRSPLEKE ANRWSGLAEA VGFQQRSFSS YNRCQARLLV GLFQDGHQIQ EDEDTMLLCW 420 KSRPLIAASV WSSSSDPA*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MLDDHERSFP DPQQVAVNPV SPPQYQQQQE IERSLVDFRH HSHDERVDFV YPELGVQVHP  60
WDEDMDSIRL VHLLLGAAEA TVCGETDLAI AIIDRLKSCC STQSGTTMQR IAAYFRDALN  120
CRLHGLKFFS RTESQFDTVG AFHVLHEICP YIKFGHFSAN QAILESVAGE QRVHIFDFDI  180
TDGVQWPSLM QSLALRAGGP PQLKITALYR PNSKGALSTT QETGKRLAAC ARQFNVPFVF  240
NQVRVDGESE EFLSSSLKLI QGEALVVNCM LHLPHMSCHS RDAVRFFLGK MAALRPRVLA  300
IVEEDLSCTS TTFTGRFHEA LYHYSTLFDS LEATLASEDE MRSLVERVFL GPRIKNTVTS  360
AVSRSPLEKE ANRWSGLAEA VGFQQRSFSS YNRCQARLLV GLFQDGHQIQ EDEDTMLLCW  420
KSRPLIAASV WSSSSDPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-56	98	435	46	382	Protein SCARECROW
5b3h_A	4e-56	98	435	45	381	Protein SCARECROW
5b3h_D	4e-56	98	435	45	381	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002972121.2	0.0	nodulation-signaling pathway 2 protein
TrEMBL	D8RM41	0.0	D8RM41_SELML; GRAS family protein
STRING	EFJ27038	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6839	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	5e-82	GRAS family protein

Link Out ? help Back to Top
Phytozome	96442
Entrez Gene	9640496

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]